monsteRbashSeq
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monsteRbashSeq

Lisa K. Johnson

17 sets, how to display all intersections with UpSetR plot?

There are overlapping identities between all 17 sets.

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XSEDE login with bridges

Logging in, orientation, and running jobs on PSC Bridges with XSEDE

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Annotating multiple de novo transcriptome assemblies

Checking orthogroups (OGs) and comparing with transcript-level annotations

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Running clust on Jetstream

Exploring gene expression profiles with clust

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XRAC research proposal

XRAC research proposal - January 15, 2019

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New vs. Old versions of Trinity

Does the newer version of Trinity (v2.8.4) make better transcriptome assemblies (for killifish) than the old (v2.2.0)?

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Explorations with Orthofinder

Running Orthofinder for the first time, taking a look at the output files

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De novo transcriptome assembly, annotation and evaluation of the branching tube Caribbean sponge, Aiolochroia crassa

Sharing and seeking advice on a de novo transcriptome assembly and raw RNAseq data

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Killifish PromethION data sharing

Sharing PromethION sequencing data from 4 species of Fundulus killifish

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Blogging with Pelican

In Lab Learning Opportunity (ILLO) by Data Intensive Biology (DIB) fellow grad student, Luiz Irber.

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  • Recent Posts

    • 17 sets, how to display all intersections with UpSetR plot?
    • XSEDE login with bridges
    • Annotating multiple de novo transcriptome assemblies
    • Running clust on Jetstream
    • XRAC research proposal
  • Links

    • Titus Brown's DIB Lab
    • Andrew Whitehead's Lab, Environmental Genomics
    • UCD DIB Training

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